NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315906_10387442

Scaffold Ga0315906_10387442


Overview

Basic Information
Taxon OID3300032050 Open in IMG/M
Scaffold IDGa0315906_10387442 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1222
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007688Metagenome / Metatranscriptome346Y
F078427Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0315906_103874422F078427GGAGLDYSTPLIQAASGLQNLMVKSKGGILKESLVAQISAYVYYNVQVISKLTTNAAFKNKFREVIFNQLEKDFSEYVDAQARVKPKTLHHVYEWNQVGDSQSRLFKINKLNTEGLGFSISYEFLPSKTFTSTEGNRRHVFVSKASVMEAGMPLKIAPRHSKRLVFESNGYKVFMPEGASVVVKRPGGVGVKNSFMMTYSRFFKSNLVNASIKKSGFQRLFNNAMTKALRVPADIRTVKYTFNPNTIAVQADAALTSAFGASL
Ga0315906_103874423F007688GGAGMTVNYKLDAMLELRKYIWTKLQAAEIFNQDDYYSDNIGETLVPIIPVQQIPDMNQFLSGKDHIVYDKIGVSYDTLWLICNEQILFTIYSTDVSK
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