Scaffold Ga0315906_10191670

Overview

Basic Information

• Taxon OID: 3300032050
• Scaffold ID: Ga0315906_10191670
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1933
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F016965	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315906_101916702	F004366	N/A	MNSLQAIIDHIELFYNNHLQVKKVGSDFKEQLFNFATQDEKYPIVFIVPVTVNPADNTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYFTYSNDYSFDVIGTPNFQPLNNDLLDYAAGYVMNITLTVNDWTNCAVPLQ
Ga0315906_101916704	F016965	N/A	MFNINGIEYTIIGPIEVISDTQLHVETDKGVILVDDTMEIYKALTNG
Ga0315906_101916705	F001883	N/A	MGRYANTGEFNVLYPTRRKMATILKRIVDNELAGGEGTLVNSIRINAKITGFQKLEIQIVAAYYFIFLNNGAYLWNDGVITPRDFVAQFTDELNSRGITAEIYRQYTEWLTKKYPLVEAVEVLEKQQKIVYTFEALY