Scaffold Ga0315906_10007356

Overview

Basic Information

• Taxon OID: 3300032050
• Scaffold ID: Ga0315906_10007356
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13412
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006502	Metagenome / Metatranscriptome	371	Y
F069824	Metagenome / Metatranscriptome	123	N
F073146	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315906_1000735623	F069824	AGG	MERYILGCCGSYPYACTSDDCVCLENRGCVVKENFMPDFESRPAFSEQEYLWENHMKKGADCDVLDVDNFVEYLGKAVESKKGAEKWELYRQYAEKGDWHNFGRAVYFLVHDHIEDELL
Ga0315906_1000735630	F073146	GAG	MSEPVSQAVMTITEVSPYHFSIEIEGSDLSLEVSEIMVKFLNDCLQQIHA
Ga0315906_100073569	F006502	AGG	MIGLLGKEPKMAEKSEGGLLESDIESCPLSTVDADINKGNKKKAILTANYGARKDGEGKCKACEYYMQGEEMTKCGVGKGMGHCAIFDFVCADENGCQAWEAVGEEEEYEEEE