Scaffold Ga0315906_10001817

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315906_10001817

Scaffold Ga0315906_10001817

Overview

Basic Information
Taxon OID	3300032050 Open in IMG/M
Scaffold ID	Ga0315906_10001817 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	30924
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (15.91%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.7464	Long. (^o)	-83.3444	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F028725	Metagenome	190	Y
F080936	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315906_1000181713	F028725	N/A	MKLFKRSAERLRSIFTRSKQTKPLRPMVELFKHEGHTYYRFPKELNLPLERFSMSMALMERISSGLSGAEMERILAGMEKALSAGLSNPKNAAVVAGYIHVIRERQDTVIHRDLLLNLAATWVVRGDEDPAVVDPTIHQQKLELFEGMCKEASHDFFTRLDIAPLMPLLTMSPKDFQILWEYNVEEQRKLTQALKHLTTHLDTGRKK
Ga0315906_1000181723	F008936	AGGA	MASFEQLVKKKIALFESVPKELETAAIKTQAEVWRKIRPILDEMDTDAAGNIEQTEGNIRRIGVIAEELKKVLAGAEYKEAVRAFLGFIDEGVQLTNEIAQTFEEGFEPEQVQRQLLQISKQNAINAFYGSGLDARFTQPFLEQLTANVAARAPLREAVNALEGLVTGTDKLDGKILANIKTTATTAQAVADRSYSAAVNETLDIQWYEYLGGEIPTTRPFCEHREGKIFHKKEIEAWGDGQNSAGIRDIQDGTWAGRIDGTDSKSIFTFVGGWNCRHYLVPVPDRKVPDTVKARARAEGYID
Ga0315906_1000181737	F080936	N/A	MQQSNITVLTLTILCCILMLMLIKTCGSLATIEGELAYADSLNSEFTSRIKDDSSTIHSQAVQLVSAGTKLKALELREPEVLVRYKTKTVIKTEVELGETVYIDSFPHLRLPRTFHRPGKWLEIGGQISRAGRLQIDSIIIPVSYTVAIGDTLRKGFLWRKRDKVVRLGIDNPYVHVTGMNNVIVADRPKKWYETQLAGAVFGGLIGFGLGSAQN

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