NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1004582

Scaffold Ga0308416_1004582


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1004582 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4105
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F043176Metagenome / Metatranscriptome156Y
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308416_100458210F016404GGAMTVDELLTDESRAAVLRALLMIALDEDVPASARVAAARLFLSQFEEQPNAERDVLVIFDEAAFVK
Ga0308416_10045823F043176AGGAGGMQKYKIWEGERTFLPGDDASKYTVIEIVAEELGWFEDVNPDGVSGTAYYVYRTESGEIIINVVNKNYGIGEPSRAVIYLFSSLEDAAQSEQRYALEELRLI
Ga0308416_10045825F006418AGGAGMRKRRSSPSRFPQTAREIVVAAGDDYLILFDCVARDYAVEYRGQPVGWRATESEARRLIEQLRREDARRGE
Ga0308416_10045827F051735AGGAGGMFQDVTIINGPTQKNGVADYERVRIKARPLGRPYAWDNGSAWNSYTTNGGFILVFEAEDGSVYIQEVEWEIDPYPDATPDPRTYYYYERYASLDEARAGWRGWLIEYALGNE
Ga0308416_10045829F010840N/AMNLPFSQPLDKVTFGALAAATVIILTWALREFAGIDLPAEVQAALAVIIGCVVSYHVPLSKFEVEAIARKYCRNCK
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