Scaffold Ga0308416_1000917

Overview

Basic Information

• Taxon OID: 3300032049
• Scaffold ID: Ga0308416_1000917
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10083
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F007404	Metagenome / Metatranscriptome	351	Y
F014738	Metagenome / Metatranscriptome	260	Y
F037517	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308416_100091711	F007404	AGGAG	MDIVEMLQLLAAGHNGLTAIDYVWNAVFGAIGAATAYLADKEGVVLLPRYDAEQHSVELGALGRVLTGAGAGVLVGYSGYIPFIAGVVAPTLLPLLIDKIAGFAGRERK
Ga0308416_100091712	F014738	GGAGG	MKLEVLLMISAFALALVHPDAAQVATTAVVLLLVTRIERGRRERKKKSAPATC
Ga0308416_10009172	F002970	GGAG	MSYSSVTDIIELLAGLAVQYNSAVVPVRRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVAQLRFAWLARGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLIRAPSV
Ga0308416_10009173	F005302	AGGAGG	MSHSGVLAGLYAGNYAVEISTNGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPIEITLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVSQARAYATSNDGGTTTGLGVITNVTLSALDPGDAEPYVAMVTVRTPSLRQYALGTNPTNLNPAS
Ga0308416_10009174	F004791	AGGAGG	MTNPAEIYDIETIRVDRNALTIREAATVLNNELTAPVVARLVRKAIGAQADRFPLRALKRVYERVLPQIFEPDEAIRSRVAGLVPAVDEITLGEYHEFLDASERKIAFPDVAKTLLIKAYGEDILNEPYAAAALLLKKIFDVVADEGNA
Ga0308416_10009177	F037517	GGAGG	MRVRQIGTLVFDADTNIVVDANNQDAPGVGFNVNTLFDPQPFSVEIAFRRPTRLVALNAVSALARELYSYAQRRQDGRLAVAGGALVVVEDASGGTVMRSYLRDASVTLLSVETAASGVIARVRVTGTLVNSFLNYTPVSNTISSLLPYERRVVALSGLSDAYLYKHDLQYFASNVAGLYNALLAIEELESATGTSRIVAINPATASGGITLQNWNAGWQMLTRANFTSATSGTITYTIGTAFPHDVYRLFIEIFCPTAPSSNARYFVSWDGQPQIAETISEDRSWYTPALFVRDDASITLTLNLLNVPTGTLVMPIVLIPVDGVSVWSVITAPSLFTVSIRNTQSATSRPFRTFPSGVVYGAPGFASSRFIAVFNGMMVPTLTNAFADLVIFSHRIEPAAFA