NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308416_1000274

Scaffold Ga0308416_1000274


Overview

Basic Information
Taxon OID3300032049 Open in IMG/M
Scaffold IDGa0308416_1000274 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18518
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051766Metagenome / Metatranscriptome143N
F062487Metagenome / Metatranscriptome130N
F079732Metagenome / Metatranscriptome115N
F091520Metagenome / Metatranscriptome107N
F093361Metagenome / Metatranscriptome106N
F106198Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308416_100027411F093361GGAGGMHEFFTVEYDYRPESDNCYVAVVKLWIKADEDNLLPKCYVNSRITLFGEKLYPNWGSKMEWENSVYRVGEVTLTSDLDWEIVEVRVENFLKVSACILSKVTRKNLEKKSTTPSNFTREIFRTNEHC
Ga0308416_100027419F051766N/AMPIKKQGIISGQYTFSGVEDNGLVTLTSQVDDVYIIEIQALTQLFSFISPYDVPIMVDSTVYQITNATDYASASNTLIYSTINTPRGNKTIIECEIKAIGIRPNSSIIFSTQEKWIIYPEKIYEIVNAGTQSFTFTTNSIAYLRLTGKRILPTQLTSNPL
Ga0308416_100027421F106198N/AMSNNLNIQEVIRNRHAVKGKQYLMLYDTDFNTQLLIRQRFYFVPGNPDVFTPIPPVIEERLRPLNPKLGVPTALPFEPRECTACFNNPQIQQGFSEYKVFIPFRPTDYKLKQSIKEIMQLPNVSRVKYSGETHVRGTKRIV
Ga0308416_100027422F091520N/AVASYVGNYVNDVGIQYKNIVLNTYFYDNGNRTSTTYDRDEMYLPTVFKTSTVRLSDKITTCQIEYSTLRVAQCYISDNVYYEIPCPFQGGTDEFTAFFTELNNNSMFRLVNLKGENIPYGYYLVLSSITR
Ga0308416_100027423F079732AGGAGGMPLMDATKMIEEYITDFGTKVKNLSVKILEGYADKINEYVSRTAENPCPFGNLFRPRALIATFLDGTKIRYPIGNRNNLITRARQLIANNAICVDYEGEYWPYVPSTIIGSNYRSSPLSGFTNSAVKVVGTFIYTSDVLGVIVQPFAIESEPNILAESAIACLSNVSYGSSFCTGAQSLNIKARRFRGKGLVMGQTKRTYSRDIKVSDPDPYNCGNVNAPNYYCLSYIGETIKNLHLLLPES
Ga0308416_100027426F062487GGAMVTLLSREDRFALGINNYPRSIVWSAMMLLKANKVLNQSPTYPNAIRFGANRTTILIEAAFPYDRDIFTTTGGDIVSAVLPITGLSPYNGILSIPPAEPVFLELPDPDDSRLDSLEKFLVWCCMQYKVGLNRFTNFDDAISVLFFDEQETEGYPTLRVRVNLPYSYTAYCCTGSIVRAVYELFVDNPCGSGVLSIDGRVILFNGNVLVDLGLIP

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