Scaffold Ga0308416_1000260

Overview

Basic Information

• Taxon OID: 3300032049
• Scaffold ID: Ga0308416_1000260
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18965
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F007404	Metagenome / Metatranscriptome	351	Y
F014738	Metagenome / Metatranscriptome	260	Y
F019420	Metagenome / Metatranscriptome	229	Y
F070748	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308416_100026010	F004791	AGGAGG	MTKPAEIYDTEALRVDRSALTIREAASVLNNELTAPVVARLVRKAIGTQADRLPLKALKAVYERVLPQIFEPDEAVRSRVAGLTPVVGEITLGEYHEFLDASERKIAFPEVAKTLLVKAYGEDILNEPYAAAALLLKKIFDSIGDEGNA
Ga0308416_100026017	F007404	GGAGG	VDIVEIFQLLAAGHAGLTAIDYLWNAAFGAIGATTAYLADTNGEVFLPRYDAEQHSIELGALGRVLVGAGAGTLVGYSGYIPFIAGVVAPTLLPVLIDKITAFVERRRR
Ga0308416_100026018	F014738	GGAGG	MKLDVLLIIGAFALAFVHPDATQVAATAVLVLLTVRIERGRKAGKRMRAPVAHRGA
Ga0308416_100026023	F019420	AGGAGG	MKTYRGVTFWSGATDGDCEATVIRARLLGMVIDLGDEERPDKMTAWYEAEDGGIIVYEVECWEADGRMTARWRRVASLEEARYEIV
Ga0308416_100026024	F070748	GAGG	MRSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTPVRLNAYAPLDYLLLDDGQPVAALEV
Ga0308416_10002603	F005631	GGAG	MRVSVSVDLDNALRKLLPRAARIEAALDAGAAAAHGVMQVYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAARKEALAVLKERGR
Ga0308416_10002608	F002970	GGAG	MSSSAVTDIIELLAGLAVQYNNTVVPVRRLASQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRVVWEIDDLLLVRDVGMGRGVADTATALVEYIEDYVAQLRFAWLARGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLVRAPSV
Ga0308416_10002609	F005302	AGGAGG	MSHSGVIAGLYAGNFAVEISTDNTAWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTIGKQEPVELTLTFLYNETSGSAANTIVDRFRSATPTLGVRWSPRGLVGSARAYATSNDGGTTFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSNPTNLNPAS