Scaffold Ga0308416_1000126

Overview

Basic Information

• Taxon OID: 3300032049
• Scaffold ID: Ga0308416_1000126
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26519
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (93.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022362	Metagenome / Metatranscriptome	214	N
F056952	Metagenome	137	N
F089597	Metagenome	109	N
F096158	Metagenome	105	N
F098168	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308416_100012610	F098168	AGGAGG	MRARFQSDLVRDRLRAIRSIVREVVLERRIVFVEARDGKLSFSTRSGIAIGEIRFDADDKKVVIEEEGAAAFDANEFVSSIDRAAGEVVEIANGPDRDYIRFTATEYAFPRACVASLPHVAHSDHDRVSVSSSESPVVRFAFELEGIFARTVFASKSSVQSKSRFVLYRSGASGLVVFSTDEKRYAIVRSRVDADTESKVLAYLDYDSAVLAHSFLDSSDERVEVGVDTNGWLVLAGESFSVGLATLSVPNNGHRFLDFDRKFRARVHRAATIPYESFVRAYRSIEPVISKEWRTIGFEFGESSVTLSATSDLGVSAKSRVDFESIVPTNLRTTIYLDSKYVGDFLAAVRRVVSAEALESTKIVFEREEDSKGIVFFGIESDDWRYGMMAISRD
Ga0308416_100012615	F096158	GGAGG	MSKTSAHRFVIESTQFANLERALSVALPAAKSLGVDAGIFWLRYSIFAATPYASIGLASCDLELEELPECIAISQLAARAFLFELQTHRVRYLERIDFVATRDRVVFSFEYDRKSKSSTPPLFSRYSSSWRPRTTPREYYELLTAHRPYFECTLATREIRKKLRGHEDYGYVVLEDFPDVISHVTVSRSLLVAFLEAAKDEDTTFRLEYYEGQRCVVCRAGDVIAILSVID
Ga0308416_100012621	F089597	AGGAGG	MPRRLSWDEVSACIDRESVERYGRYLRGVVEGETYVPKATTTPSLVNRTIVLGVVYDWCRHRYRHRPFAVVIRAFSWCARFCYPFHPVFARFGIESEDVIEALEWIATDSYSFRFAPASYGVTIVSEHRDGDRRARHYFTPVPLVAPGIDDPTAVPFRLRMATRLVMEAALRAICVVDDDGNYDEIAIRATVRDLLEVAAPLATPN
Ga0308416_100012622	F056952	GAGG	MKRRPSYRLLDVFGNVVYTSSSFRYTIRRLAQSLVKPIIYSAQGRRHVVFYLENGVVKCCVGNFGESRKSVEERVIRLFRAADVARRVRRHV
Ga0308416_100012630	F022362	GGA	MIANLLDAVVNVLNEPPLAASVPATKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEIVRARPYVDASSIETVVNDVHSIASRITSQEVLERGDIAYAFESISFSDPLYEIEEVFDESSFVRASITARYAVLESL