Scaffold Ga0315329_10081900

Overview

Basic Information

• Taxon OID: 3300032048
• Scaffold ID: Ga0315329_10081900
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1614
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F029400	Metagenome	188	Y
F048570	Metagenome	148	Y
F084099	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315329_100819003	F027156	GGAG	MIPKVGQLLRWYDNFTLLSDDPHHDVGIVKEVQIEGENFFGNDEYDYVVIIDWCKGPHHSFHDQEEYEESIRTNEIVVVE
Ga0315329_100819004	F029400	GGTGG	MKIGDLVTFCPEAWGTPLEDRPLGVVVNMESLKNVHPMVTAIFPGDDIPYSSMIEDFEVVNENW
Ga0315329_100819005	F084099	GAGG	MKIGDVVRMNHALTPERYGLGLVQKIVETQQTFANGGTRLVYHILWPDNTISCQFDTEIVLMGRVK
Ga0315329_100819006	F048570	GGAG	MKVGDLVRCRPRSEDENYDEWLGLVIGEPAIGVTVAVQWVCSDGRGCVEKVNHTPEELVLVNESW