Scaffold Ga0315329_10037188

Overview

Basic Information

• Taxon OID: 3300032048
• Scaffold ID: Ga0315329_10037188
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2322
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F018265	Metagenome / Metatranscriptome	236	Y
F018553	Metagenome / Metatranscriptome	234	Y
F028526	Metagenome / Metatranscriptome	191	Y
F033080	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315329_100371881	F002874	GAG	MKEKIDLSLNRSLEELESSYWEFIDATEGEDSSGWSKSVQEDISALEGYLMKMEIL
Ga0315329_100371883	F018265	GAG	MSMESHTLRAVKITQNIFELRKVNREIEEVSKIIELLERRKTRLENAM
Ga0315329_100371884	F018553	GAG	MLCSNRLRIAILNEEISLWEKRLNDNPDDIPYLGYIRTTLKGRVKELKKEEKKLDILV
Ga0315329_100371888	F033080	AGGA	MFDIDKIAEKVANEPMEDELRNWIIGETEDGHMPLVRKPQHVIDENRADEIKERRKELAQMEMYDDPYLNWSGHR
Ga0315329_100371889	F028526	GAG	MEDYLGAVKTKPELFLKLTKRVSRPEYTMNFMEDRNGRKAMFYNYKGPEFNEGDCVLLKATIAEHRLDKYERGKPLTYLNRVTVLENRGTI