NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315330_10765565

Scaffold Ga0315330_10765565


Overview

Basic Information
Taxon OID3300032047 Open in IMG/M
Scaffold IDGa0315330_10765565 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007474Metagenome / Metatranscriptome350N
F016005Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0315330_107655652F007474AGGAGMSTFKDWVMDEQENRQNSFLDNCYEKAFVIYSYDKNLHISHLENSDMPLKDFLKAYKVKMRELGDDEVVYHI
Ga0315330_107655653F016005AGGMEDNLPDNRVDIFYVADRLVGILETDNKHLRAELEEFKQEIFHNIGANAVFEQNN

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