Scaffold Ga0315330_10039966

Overview

Basic Information

• Taxon OID: 3300032047
• Scaffold ID: Ga0315330_10039966
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3146
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016897	Metagenome	244	Y
F023451	Metagenome	210	Y
F070148	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315330_1003996610	F023451	GAGG	MSKNKWINFNKPMFIGMDYDCKFNPLKDWQQSLKLKIDDDTIGYDFKIVAYKKVKIESEE
Ga0315330_100399664	F070148	GGA	MYIDKYTINSYGNEYKGNKTLKNQLLTSVKSKDGNRLKKMISFLEEYEELNHPCSSEIELIINIKKSED
Ga0315330_100399667	F016897	N/A	MMRLKVIKNKQLNKRELTKILFNTLKDENGLAIRMIVRDYNNKQMENKNVKQIRSMATNG