NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315330_10004739

Scaffold Ga0315330_10004739


Overview

Basic Information
Taxon OID3300032047 Open in IMG/M
Scaffold IDGa0315330_10004739 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9315
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009527Metagenome / Metatranscriptome316Y
F067591Metagenome / Metatranscriptome125N
F090175Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0315330_100047391F067591N/AATWQTQVKQISMALSVVGALWMALTVGLGDAFNIVTDPASVDPATAASLGGIDFIDRVAVAGVFVTLLGGAGFGLVSVSGNNPPALNTILRYAPMIIGFVAFSAFGSEAWDLISGNRTWANYDDVQNSYMLFLAASLTSAVVGLIDRR
Ga0315330_1000473910F009527GAGGMKRNAFPPSIVNLLLQEGQRWKVDGSIREALGTGIIPIVASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGIPDHWSGRVSNTSFNDIAKVEGPAVWLLDDSATHFNSRSAMSSTNQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDADLIPQERKEWKGEIEHGQWELRKICKDIRFRDYFWSAKDRMLVKAPFPKFLSKEVDAKKADLLSRPMRYHCIEDKEVMLGIVKPPQKRRQKRKKVEL
Ga0315330_1000473920F067591AGTAGGMATWQTQVKQISMALSVVGALWMALTVGLGDAFNIVTDPASVDPATAASLGGIDFIDRVAVAGVFVTLLGGAGFGLVSVSGNNPPALNTILRYAPMIIGFVAFSAFGSEAWDLISGNRTWANYDDVQNS
Ga0315330_100047398F090175AGGTGGMIEEESAASSHKGGAKGRTWADVFVGASYLTGGGLFVVAMAVLLYFLVGEVPGWFFIALLSSLVFIPFMMERAKDDASLILVSDGPHRLTEYRIGNRVGLEIEGNSVLFQSNSGVMRQVLTSIDVENKKAVGSEFANATQIDQVRDLTTLQQMVELLQNTLKESRISAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEVSESFGIEETSIELELDETIQDMVEDFE

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