Scaffold Ga0315330_10003185

Overview

Basic Information

• Taxon OID: 3300032047
• Scaffold ID: Ga0315330_10003185
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11268
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014505	Metagenome / Metatranscriptome	262	Y
F055664	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315330_1000318514	F055664	N/A	MESKKTSSQILINRKNLEMFIHILTQVHMRGQLSADEQAFVGKFVDLPAAPVKANRSQRRLNQKMINQIIREERKRNLEE
Ga0315330_100031857	F014505	N/A	VDNIENFYRENFKRLTGFIKQYTDGSYEIASDIVQMVFLRLLEMEGEGRTNFYEEDSLNFFYVYRSCINTALKYQRTKKRIDKISLEDMTHDQLEFEEYPEQKVAMEKLINYMEEELEDFHWYDAKMMRIYMSGTSMNKIHRESDIGLTSIKNTIKNGKARIYEKVKEDYQDFQNGDFDK