NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315289_10676640

Scaffold Ga0315289_10676640


Overview

Basic Information
Taxon OID3300032046 Open in IMG/M
Scaffold IDGa0315289_10676640 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002909Metagenome521Y
F038673Metagenome / Metatranscriptome165N

Sequences

Protein IDFamilyRBSSequence
Ga0315289_106766401F002909N/AVAQIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPILANIDKNNSIASGKLRQSFKPGNITKSPTSINTILLAEDYWEFVEYGRKPTRGGHIEGTPYLWQSLKDWISQKGIKPAEGQTYDTLAKAIAKKIHRSGTKARPFLESAFTESIQMELVNELNARFGDLIFSEDV
Ga0315289_106766402F038673N/AKMDLKICTKQSGILTNSLPPKKNNWQNPLFYSMWFLLFLIPLAGHSQVLIDTCVIKEANHYLVKGAIARRQVTVLRKIVTSDSVIIDQQDSIIVKQKTNIQYLKDDNNALVKRNKAISRTLISYKMLSVVLTILSVAMWLK

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