NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315289_10582581

Scaffold Ga0315289_10582581


Overview

Basic Information
Taxon OID3300032046 Open in IMG/M
Scaffold IDGa0315289_10582581 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1048
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025727Metagenome / Metatranscriptome200N
F045750Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0315289_105825811F025727N/AMSRHAFPLVESIKVVHLSDGRTIRVVRDRTEENLKANYGDGDIHLTCVSQAHDPVEMVKTLARMESVRSVELVDSKGNGIVVHKQK
Ga0315289_105825812F045750N/AQFPHSKTPIQWSIEGGKLFQRRSENRFSRNIQLAHTGSWPRNTVSRIHAYGTSRTNNQTNNRGTTTMETVMSRIGRMLGLRMHNTKRTLCPVPQSTQTVSSGPDTVAIDKVPKKKTRKHLKHTYMKTNDSIDKVRAFRVKGLTYKAIGVELNISKQRVFQIIAAGKKRDSSNNKWTAGLSSRNTHLMEKLDIKDKATAIHAIHNRDIVPFKWPNFGIRSYHDLCSWLGTLPADPGLGRHCPHCGKTSKQ
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