NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315289_10438519

Scaffold Ga0315289_10438519


Overview

Basic Information
Taxon OID3300032046 Open in IMG/M
Scaffold IDGa0315289_10438519 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1281
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026270Metagenome198N
F050335Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0315289_104385191F026270N/AQMWLNDGIARPTSVYLCSFFFGSLSRVIEKYPLLFEGGDEGYDTTVDKSPIVWLEIIDKIVKGDRTKWDFILMMPLIEFLNAMAFYKAKTKERQKRLEDAAGKGFNPYIVACLNEML
Ga0315289_104385192F050335GAGVQHLLHKWAQSNKSGRIWNEWIQSLFCYVALTITQQPDSYHPGFNDTNFVITESSGGIYTSSNFKFIADVKVATTSIAKLKAPIYFGSVNKGVFNIGRIMESYVSNNWSFTDTSPSGCVDSFSDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNAALNPFDLVSYAQAQYLATS
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