Scaffold Ga0315289_10422837

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10422837
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1314
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011827	Metagenome	286	Y
F016246	Metagenome	248	Y
F025916	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_104228373	F016246	N/A	MSQLDMFPLIPRRLTHAEILAGFAELLRAVEAMEFWQPYP
Ga0315289_104228374	F025916	N/A	MPTHLTRPLLGCRLRDCGAPDCPVCAGAEAARLYREQAECDHEEHDHGICLACGADITDELAGLAEDAADAAQDR
Ga0315289_104228375	F011827	N/A	MRNVTHSANTHNLTKSRWKARDAVSSQRHGEKMDDIRIACHLWLLKRCPGYAAEHAEHVEQY