Scaffold Ga0315289_10255894

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10255894
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1853
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020197	Metagenome / Metatranscriptome	225	Y
F054064	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_102558944	F054064	GGA	MVPQIKVNSMSGIKSLVGRKMTKSVKFMGEDIKISKLSVAEVMDIQVKAKEIESDESAGLALLQTVIRSAVEGAEDLADEDFQTFPMDELSKLSNEIMKFSGIGADQGK
Ga0315289_102558945	F020197	AGGA	MTDELQKPFSTSYVLKTTAKHMRKSIDISIRKTFERVKEFQPDTDKAKEVFITLSILHQMRKNLDDFQALNSDNFKGE