Scaffold Ga0315289_10236205

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10236205
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1955
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F016125	Metagenome	249	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_102362051	F014606	N/A	MSTRTNIRTATANALTGALVVPTANILRGRNNTIASISFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFIAESGTYLIDDLFDTGSAAVEAAVLADVTLGGQCRDLHLTSCDYVIEPDED
Ga0315289_102362052	F100667	AGG	MISIFSDTKKLEYGLARLADAAKVDLGLVIKQEGAYIAKVMMQIIPPTGDKTKNGKTVPTVTGGTIKLKKASGLSINAKEQGENAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGQNETMGVSLGNEGGKKIRIYRKFWLENASIPQMQAFHHANRNKRGRRKQVTRSAIGRFKVQDQMWISNESADAYLAYVQKSVGLAKAGFAAAAMLGGVRVPSWIRKHMAKAGNAQGHFGANPFFIARTTGNKIPDLQRVVDGALKIRYKITISKTRAILANRAVNLGFTRVGGAMPIKSDA
Ga0315289_102362053	F016125	AGGAGG	MAAVRDFDPTQINSDFSAILEQAGISFTYQGVSVTGVWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPKVTQTLSRASVTYFIERVTLDAEGAGCEISVAKVI