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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032046 Open in IMG/M |
| Scaffold ID | Ga0315289_10177044 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2364 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5072 | Long. (o) | -110.3564 | Alt. (m) | Depth (m) | 87 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007260 | Metagenome / Metatranscriptome | 354 | N |
| F010835 | Metagenome / Metatranscriptome | 298 | N |
| F013879 | Metagenome / Metatranscriptome | 267 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315289_101770442 | F010835 | AGGA | MNAVALRTERALVDWLAAEDWSASPIGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTATPVHPIDRTCEIDITATLQLSADDTSEAQALAVVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI |
| Ga0315289_101770443 | F013879 | N/A | MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGALRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNQALINLANQYGLPQENVAMHKGSSAYAYNAKAGFNPSSHVRMNIGLADNQVGTVEGIYAKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT |
| Ga0315289_101770444 | F007260 | N/A | LVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGANADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIVSAKRDGSGAYYALELGSKTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |