Scaffold Ga0315289_10167953

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10167953
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2447
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019816	Metagenome	227	Y
F033030	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_101679533	F033030	N/A	MTEKKWSAGAWKKSTAKGEVINFTINDVRYSMWVNAYKTEEKQPDFKIYINDFKPKEDTEGLPF
Ga0315289_101679534	F019816	N/A	MKELLPFERQILLAEVYHYAWYNEEAYADLLAFIDKYQTILDKPVFLTQIPNNDTETTNLEPLAYGQDLDTNPSIDEVQ