Scaffold Ga0315289_10162667

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10162667
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2498
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002433	Metagenome / Metatranscriptome	559	Y
F005503	Metagenome / Metatranscriptome	398	Y
F010982	Metagenome	296	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_101626672	F010982	GGA	MIMVRLSREDEIVAHTAGLARESRYGSNPKGIKERGNFHNAVVIHSEAVGAEMAVAKYFGVENFEPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLCVGESPTYYLMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLKKSIHANT
Ga0315289_101626676	F005503	GGAG	MTSSEIGLFVLMAIACILWAICSYSVGYKEGHKDGYQRGKAVGRHASSKAVR
Ga0315289_101626677	F002433	AGGAG	MAVGGLVLAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEQRLDTLILEMALKK