Scaffold Ga0315289_10124106

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10124106
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2971
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021771	Metagenome	217	Y
F061855	Metagenome	131	N
F068840	Metagenome	124	N
F095478	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_101241061	F061855	N/A	PFNGTFVVQALPQYLYIGIDSDGFPMYNTNVPLPNQVMYRCTGSNVERVATSTGTITYTQVCTWVSASDVEDYLGIGTASAADAAFLTICAAASSAFCFLRRQEAGYKDSLTVLPSTAVGLGTRAYGAFLYRQRGSVTDFASFDGMVSGGSNGLSPMIKQLLGVNRAQVA
Ga0315289_101241063	F095478	AGGA	MAYVIASPRLGKVGDAYEPDDGVNVEALIDGGFIKSTSKSTKSDKPIKDTNEE
Ga0315289_101241065	F068840	GAG	MQLRLKATFTDGTVNEVVTNLSTVVAWERKYKRKASEMAQGIGVEDLAFLCYEATRASGTTVPGTLDQFITSLNSIDVLESQDPKAVTAQ
Ga0315289_101241066	F021771	GGCGG	MASVPILSVQIEGIQGALKELNTIDPKYRRLVTRQIKAAGADIINDARSMVAHFDNSLENGAPLSGMVRGNIIKGRETSWKTDQVQKGFKVKVGVRATKERYVNFQRGGIPSGSKGRGTLGTYTEQVVYGAKPYQLMVIQQADAAGAIYDHAGRNTNSTFVTNLDAEVGPEPRAIDKAVERGREPVTKKVYEVVQDVEKQINRNLRFTYGN