Scaffold Ga0315289_10110342

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10110342
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3205
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054683	Metagenome	139	N
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y
F098949	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_101103424	F054683	N/A	MNKTESRRALNKLVFEMVTSLGYNIDDDGDGGRVTFIKPNFKNYHDSMEYHKSRFDICVLNDASDKVKEDGETIEWFINTQRKALDI
Ga0315289_101103425	F085381	N/A	MKTVLEQLMELKDKINAIEIAVCGETICSDGACGCGCDESPVEVEDEGPEFDSAGFSKEDRVVDGQYMVTEDDKYAGHVHLTKAELIDFSTRLTERVIESIKKAVTDMELNADDLVTLELNSWSNVIEMELDNGTLTNNVNSEIEDAVNLDPDSISDKIDDIFGDMYLERIS
Ga0315289_101103427	F078411	N/A	MDYNKHTDEVLERLQAHQILEILATANHSIDQALKQIQELEHNSMMYLDMRPTREIMDDINALHLHLHFLDSAKSFAKNEIHEIGFYLN
Ga0315289_101103428	F098949	N/A	MELLKHEIEGQVVENTYTIQHPKEGVLVYKEFIDSSNGKCIDFILRSKDGYEIDEASLVEEVQEFIDNL