Scaffold Ga0315289_10061714

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10061714
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4604
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F051646	Metagenome	143	Y
F070805	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_100617142	F070805	N/A	MYLQLAGHTPLHNAENPLAPGAATYSYDKFYLGEGQDIILPDALYKTSPGGFVDALKKLKKLYEDFQDGKKPTPALVAARAATAAMPSGGVQRASTIQPLNGVTFAAVIGLLTQAIPYIVSILGSFTATVVNNSITNKYNQNAYNVQALNNMNVSELNLQIQRLDQDIANVNRFNFIQLMALSQFRMVYQQRFDRISGFGLLSNLPGWVFPAALGLGAYLLLRRK
Ga0315289_100617146	F002259	N/A	MGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSQGTAAANHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPTDATGVIYTGLANNSVKFDLVIGNKTVLKDVSCEFGGEQAFYNDGAVASSVIDLEGVGILIPPQVEYYVVAKPFANDTRVSSSIRLGCYLFGTGALLNFNTTI
Ga0315289_100617147	F006697	N/A	MANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVNAVAGQQFFEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSVQIVLNGSSIDLTQHLNLNIQVGNQTVIKDFDPSFNASNRGLSFDRLHSGFDSTRNLEVRLLTEIVIPPQVNFKATLQFAGNTIAVNDDVTIIFKGYGRIFSAGNSF
Ga0315289_100617148	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGLLLSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHDLGASVNGGVTTGFPAFVPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0315289_100617149	F051646	N/A	MVGLFYIYLPMSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSYAVIFGYDFSPAGGGFKQTTGLLSVANAGGIPILNGANIRFFETQQISFYTGTDFYPFIHHVDCRTQVLISNIQNNIPPASNTVESNQIYEEIDSTPIARQVYITSTNDVTITHGLILNAIPATTGAIPVTSRTPGFLTYGGSAQLIQAQTNYGPGATPLQFMQPSPKDFQDFGLGLL