NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315289_10051913

Scaffold Ga0315289_10051913


Overview

Basic Information
Taxon OID3300032046 Open in IMG/M
Scaffold IDGa0315289_10051913 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5111
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001883Metagenome / Metatranscriptome622Y
F004366Metagenome / Metatranscriptome441Y
F016965Metagenome / Metatranscriptome243Y
F033725Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0315289_100519132F004366N/AMNSLQAIIDHIELFYTNHLQVMKVGSDFKEQLYNFATQDEKYPIVFVVPVSVNPTENTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYIYYMDSTDYAFDVIGLPSFQALNNDLLDYAAGYVMNITLTVNDWTDCAVPLP
Ga0315289_100519134F016965N/AMININGIEYTITGPIEVVSDTQLHVETDKGVILVDDTMEIYKALTNG
Ga0315289_100519135F001883N/AMASYGNTGEFNVLYPTRRKMATILKRILRNDIVDGEGTLVESIRINAKITGFQKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDYVAQFTDELNNAGITAEIYRQYTEWLTKKYPLVEAVEVLERQQRIVYTFEALDPPAGFSPNYPLDV
Ga0315289_100519137F033725N/ALFKNLNMISILNREIPNQLDEITIEQFETITDINNDPNLDPIDKHLKVFTYLGIPESEFYDYDVADFVNVVKEFNSLEQKEYETVEEIELENYIYRAQMKLTVRDTKMIEKIALHKQKGYVSEMLAVMFKREDLTPAEHYTDAHIKHKAKLIRKLTANVAIPYLMFIAEKISQQVKNDTSTQAMEPSNA
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