Scaffold Ga0315289_10049489

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10049489
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5267
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008615	Metagenome / Metatranscriptome	330	N
F011474	Metagenome / Metatranscriptome	290	N
F016114	Metagenome / Metatranscriptome	249	Y
F026828	Metagenome	196	Y
F030991	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_1004948910	F026828	N/A	MITEELIANAIAFLAGWILKRPDFVQKIISKLFTKKDK
Ga0315289_1004948912	F008615	N/A	MNRPNTFGAKMFGRFISKGWHIRFTDSYQDRVCVIPPERLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFAAWIGDLLRNPEKFT
Ga0315289_1004948913	F016114	N/A	MHIKYWAAAFFDSRDVETINDMAAMARRMLICQRELQRDELLRLKMKYPHLTTKD
Ga0315289_100494893	F011474	GGA	MKEKIDHLTHFDIVVKEELASCGSADEMLDVLAKNYDLRKPLGGLTKAAFTIGLRTAVGMLRPEVKADANYKTKELKDTRYPHLKIFS
Ga0315289_100494895	F030991	N/A	MILKYLGCDKKYFRYELYDGDRMELYVETKLSARATAKLLFCNFGIKHIVLKIYNRTYGVKT