Scaffold Ga0315289_10002628

Overview

Basic Information

• Taxon OID: 3300032046
• Scaffold ID: Ga0315289_10002628
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27486
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (37.93%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5072
  • Long. (^o): -110.3564
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F061533	Metagenome	131	N
F075040	Metagenome	119	Y
F089880	Metagenome	108	N
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315289_1000262813	F014513	GGA	MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRAWTSQEEYVQICCVNDCFTLPARYEQIKLAWIGNESTSLADEWFNATNAFALHADHSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVATANPPTLAKSDLLVKGIRGVSKPVTKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLSLAVQEQEKEMSNVEIPTAAPIRFANYSRADNLIGSDLLSPSPNDYFLSR
Ga0315289_1000262816	F101028	GAG	MPAEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNIPILAGADQSETIVNDILGGSFQGAYPYRSTNYRTSDGMLLSVSGIIYFLKIVNNQAFAYKLIEGNDPGMMHTFFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNGDYCEIVSLGDGITNTNFTLIGAPSNTIGVKFTAVITDTQRGTGTGTVKLPAYRLNPYLAKMPIGTIMEYAFGRVFVSDRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPELGYNLRGQGQLVVLTGAGAFSMDVSLPRSQWNTSNIQRISLLGRGCTSPNLALVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSRDVNKWVSNDTPWLKQFASTMFFDNYLISTVAPQTYRAEGVEGLNRYHRGMVVLDLDQSSTPAPDAQLSFRWNGVWTGIRPTQLLTALIQGEKRGFGFSFDKDNKNRLYEFTTAQGDDYGPNGTRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSYVDFRADSNPCWSQLKVPTTFGCDPCSPVVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN
Ga0315289_100026282	F015061	AGGAG	MSEPTQQNETSKTILEAFSFIKCEDEKLNERVHAMGSLLHTAAMMVVRSESRKGEGFEAIRYLETAFLYYKESQFRKRFDKEEKEEVSRIIS
Ga0315289_100026283	F089880	N/A	MKKKELELFSPTQEGVLVPLSTYLRHMGEFVKDEWPGITITEAHIKKAWSKLQKNEYLDDDAPDEMLEMYERMSADWDMAKEMEEDRQNVDDYKPEPIAATPEPVNESLALVESVKNGLELSSFTQKFDIGAGMTQCVPKGKVEMKDWVAAFAFGLTLESGAQWIIGDSVCALENGGHDDVVNQLCSNFKKSYSTVSGYARACRAFPVGKRDPMLPFTVYREIGNANFGDDKTNKRKQDELLEAAKNDKLSSTEVRNLVRHEQGKDDKPTHHRYLVLNVTNFGNSEVVRAMPEEVQEHQLLIDLGDKSWFDPAEGDWIKFLKEQ
Ga0315289_100026284	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFTGPKGEFVIQGGDIEIDGNTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKIEFDQPSEEPARVAHTPKSIVTDNPEKAIDEIVEMHRYINSLVRHTYKDVEDEETLRSYVSSVFIEANRKGIRYSRHKVEEPKVEEPKVVEPDPSDWASAIVPSGSQKGKKLAAIGKPALTKLYEYYLEKGFTTPFAKCVEKAAEDLNLDAPTEEVDDIPY
Ga0315289_100026288	F075040	N/A	MKDTPTVKKELAEKPVVQNNDLKREIYLRLVSSAASDGRFLLGNLPNANAVVKQGDHLRGVAELLTSCFEK