NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1021577

Scaffold Ga0308400_1021577


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1021577 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1604
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011398Metagenome / Metatranscriptome291N
F063726Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10215771F011398N/ARMTPSYDAMLYQSKHKRENLFKLSTYGDGTWVVFEPERLRPLYGQYTSLSAADLPGEQTWSFRFTYDTSIPDFLSSQACRNSPDVRRGYPESLAKLLGGDFPGTVRIAKTYTLLGNDYLTFAIVFSQPLDEVARLVTNRLGKTLNANLSPSSVQIYGQRATRITLSRFLYQLNVEAIELDSQLTLVRGREVRFGGQSR
Ga0308400_10215772F063726GGAGGMKVLRSLFAVICAIALTTASVYAQKDDPNWAVYNPPNPKVVYTWLDLDRSFPYSNANAILDADILLRLPTLYRRDYKPLPSGTRLPIHIAPDVQDLSKARWKVWRFGQFVADGIEVPTIEPWLKSRTRQLRAVTYRPLPKLHSGDPIPHRVDGLRYGEMRIPVLNYSPDMIAGYPCPPEGEPREAAGELPRVWLELSDPRSTGAALVPDDPCVTQRAIDLAVYALSHASPDQSMSEFMNGLRTIRDRSVSGIYGYSDTDAIYRMYYLEQDKIAWFGKDAPLHGGLMHFMPNPQNKRLYWLLVHPPGDPRLHPVSHPFDAYVRAAEAGTATSGSPYWR
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