Scaffold Ga0308400_1009511

Overview

Basic Information

• Taxon OID: 3300032045
• Scaffold ID: Ga0308400_1009511
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2611
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022362	Metagenome / Metatranscriptome	214	N
F070715	Metagenome / Metatranscriptome	122	N
F097406	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308400_10095112	F097406	N/A	MYESRLFHDHCHYGIIAAAIANAFRGNESPTIRVEDIFPDVAEYLERFGVRGDSELPLLTKDDLKSWLAQQKSERVARVSS
Ga0308400_10095113	F070715	GAGG	MRHRFTDEHGREYEVARISFARYHDLRDHGFDLAKWASEALARVVRPDITTDNALSQRFDYEEFVRILADGAVFRDRKTAEALLTVLCRDSLSRHGVTANEVFESLYGRSIWEAEVAFISRILDFFEGHPIMREILGAALKLLLSKVEASTVTSSLTSGTSPATSA
Ga0308400_10095116	F022362	GGA	MIANLLDAVIDVLNGPPPAASVAASKTWAHYWVLARETPDVCVVTFVRSERERLSRSRFRFLLDVEVVRARPYVDASSIETIVNDVHSIASRLTSEEVLERSDIAYAFDSISFSDPLYEIEEVFDESSFVRAGITARYAVLEPL