NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1003142

Scaffold Ga0308400_1003142


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1003142 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4825
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000353Metagenome / Metatranscriptome1246Y
F012675Metagenome / Metatranscriptome278Y
F038253Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10031421F012675N/ALAVKSTSEEKNVAPIVQKLRNEALRESLSAFGLEVPIRYARTSNSTGRTHVRLSREQKQKLVESFLDALPTFEALHDVLGTLPKNTNLMVKQIRTLVKRYLGIANRLQAKVTQE
Ga0308400_10031422F038253N/AMATHDKNMTGVQQELLRIIQSDEARELIESMAHRMAVIEEAYYRIRELREAVQPYIPEDSEHDEEYWLAAYLVRPHASTVIEKFRQLREIQHKLAKLEEQVQEMNRKESSLEDKLAKVDSAQENIGENIYKLISEDADPYVSLGKSDLYNLLYESVWEWTAKQLSTN
Ga0308400_10031423F000353N/AMLGMTTQAQVSGTELKVRIEKALTEKSLKKLITNLEKELNGEHSFLPHEVETQIRREITSAGVAVSQHGGWYRCIAAYLLLPKLDDLLAVKSTSEEKNVAPIVQKLRNEALRESLSTFGLEVPARYARTSSGTGRTHVRLSREQKQQLVENFLDALPTFEGLQDVLDTLPKNTNLMVKQIRTLVKRYLTIADRLQAKVTQE
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