Scaffold Ga0308400_1001807

Overview

Basic Information

• Taxon OID: 3300032045
• Scaffold ID: Ga0308400_1001807
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6686
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002179	Metagenome / Metatranscriptome	586	Y
F004170	Metagenome / Metatranscriptome	450	Y
F009196	Metagenome / Metatranscriptome	321	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308400_10018071	F002179	GGAGG	MSDPSLSPLVRKAARNLHTVEWLSENDTWRSAWLCRRDFWRTRRMMAMTPDEAAAWLPTLAFAVSCEKDDDVLAELARQPLPEPLPPEALPWRAALIRSWERQRAATSWGETIRLSALVRLDRRAERLPEWLREARRALDLGAYDRHLRLAALAGWRPRPGDTPPHGDKAEAAQAWVRFWEERYRTSGSEVDGLLAATALLHLAEAGWLPSGLSPERLRAELRQRVRQCLISYDDRPVLTMLL
Ga0308400_10018072	F004170	GGA	MSDPSLFVSPLIRQAARNLCALEYLSGIRTWSFNPFYRLDFWYTRRMMMAVTPDEAAAWLPALAFAVSCERDADVLAKLARQPLPELLPPEALPWRAALIRSWERQRTATPWGKTVRLAALVRLDRRVERLPEWLREARRALDLGAYDRHLRLAALAGWRPRPGDAPPHGDKAEAAQAWVRFWKERYRTPGSELDGLIAAAARLHLAEAGWLPSGPSPEQLREEFRQRVRQYPFSYNDRSVLRMLLSSIPADVSTPERRRRDVTEWLKLTDKDVDGDKREAVWDMLAAWQREGVLERCGIDREQLQELSLLPDLARTLEWERASNVLLAMAEYIPGAVEVSAHPEAARTVVAHWEALSRDGDWECCLAAWVGRWNLMRAGVLTAEEQARFSADYVEAVKFELEVFEPEVTALLTLAQITPPGTFPLATWAGRLSDQDDRCRLAAQMAIHGWLVGVMKGASGEWRVASGSSLPATHCSLLAITRRQMRQVLRRAGQEGTDAGTVAPFVNLPPEVLPDFRRLREIETALAAGQMPPPPDAGKGKRKRMGHLATLARLPEAHPRTGPPGITDRTAGRTAGSDPQARHPFPEVIRHE
Ga0308400_10018074	F009196	GGA	VNLPPDVLPDFRRLREIETALAAGQMPPPDASAGNRPIPRTVPARLPESHPRTGPPGITDKTTGRTAGSEPPARYPFPEVIRHE
Ga0308400_10018075	F004170	GGAGG	MSDPSLFASPLARQAARNLRTVEWLSENDTWLSKNDTWRPNLLCRWIFWRTQRMMAVTPDETAAWLPALAFAVSRERNASVLLELARYPIPDPIPPEARPWREILIRNWEQRPVPTEEEKSIRLFALVRLDRWAERLPEWLAEARRALDFGPKNRHLRLAALAGWRPRPGDAPPHGDKAEAAQAWVRFWEERYRTPGSELDDLLAAAALLHLAEAGWLPSGLSPERLREELRQRVWLYPFFYDDRLVLPMLLSSIPADVSTPERWRRDVTEWLKLTGKDVGRDKREAVWDMLAVWKREGVPEHFLGDSGQLLNRGQLQKLSPLPVLARVLKRERNDDVLLAMAGYVPEAAEVSAHRKAARAVIAHWEALSREAFFGGVRQAAWVARWNLMRAGVLTADEQGRFGADYVKAIGAENDRNVLLALAQTRPPGSFPLDDWKRRLSDRNNECRLAAGLAIHGWLVDMASSEQRVASRELPLATRHSLLNHSLLATHYSLSPAGRCARSCAGQVRTRTPGRSPHS