Scaffold Ga0308400

Basic Information
Taxon OID	3300032045 Open in IMG/M
Scaffold ID	Ga0308400_1001731 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032045 Open in IMG/M

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6884
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6884

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F063723	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308400_10017311	F000855	GAGG	MEWLEDFWSKIVAWFDQLSASVHNGIIEWVNSLINVWNGWMDSLLHPARAMPSNSALRWIVDWLGGMADYTGLMYMLVDYVAYAWIVQQALTAQIGIVVVGLGFRAWLVIRRVV
Ga0308400_100173111	F002229	GGAGG	MVMLLTADGVEEVDYVPSDAEIRASLDDPGLYGMVLGGVTWMRLISVPGWWTVLFGKRLIVTLAPAGWCWVMDGFGRGYWSHALSAVVADVCAVYGGRVEED
Ga0308400_100173112	F063723	N/A	LAARLGLDLVSNIPVRGARRVSTLDDLAALRGAVLVWDEVQVSLDSREWSSEAARSLTRDMILWGKRGVVCVYTSPSFATVDVRLRRLTQYVYVTSGRYRRSGVDYAVYRWHEHPYADDALVERYRFGLRLSDWYGVYDTLYGAAAGDSLAILPSPSPAPVRRRA
Ga0308400_10017318	F002372	AGGAG	MPTRKEDALWSVVHRRLAYLRALLDGLDSIDVGVTYELDYYPYAIVELLRIREDAPPLVLRSVHVQANRQWEYHSEFVLRVVEAALQLVHEYLADPSLGGAEAVWA
Ga0308400_10017319	F002795	AGGAGG	MATNDGLVLRGMVAAYREFVSRKDGRTYRVATVYGDLVAGETILCAVDGYDVFVDAPGYTRGEMVVFPARLQFARDGSGKPVVRLYVGEGVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308400_1001731

Overview

Ecosystem & Geography

Associated Families

Sequences