Scaffold Ga0308400_1000566

Overview

Basic Information

• Taxon OID: 3300032045
• Scaffold ID: Ga0308400_1000566
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13928
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F002982	Metagenome / Metatranscriptome	515	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F043176	Metagenome / Metatranscriptome	156	Y
F048124	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308400_100056614	F005631	GGAG	MQVSVSVDLDNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHSGRWASVRDAAEAALKEALAVLKERGR
Ga0308400_100056619	F002970	GGAG	MSYNTVIDILKMLSDLEVQYNNAVVPVWYLSTQANWLDAAQLPVRIIPVLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALADYIEDYVARLRFAWYVRGDVQLLNVSGIVDVIKYGERAYEGVAMTTRFAHLIRAPSV
Ga0308400_100056620	F005302	AGGAGG	MSHSGVIAGLYAGNYAVEISTDGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRQYTLGSSPTNLNPAS
Ga0308400_10005663	F048124	AGGA	MATISIWRGYRHWNWDEENDYETVTYEDAEEIGAVRFEDEEADIQYRIIEWDEGIVIFYVKREGHYCEAEIYEYPSLEEAAKEYRFVLKKAGVIQ
Ga0308400_10005665	F002982	AGGAG	VKLQFERHPHVICAVLTDAGECDRIITVARPSDAIDVFALDVSPAAYKPLDALFALPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETDAATLSEALARCVWALAR
Ga0308400_10005666	F007976	AGGA	MPSTELSNFLRVALDVQGGPYSGIHVEDGVILATDGVMLVAKKYNNLAYLRGSGSLSPKAAKVLAALAEATWIGSIEVDGNRVTVTAQTTRYDEQLGAEAAGAYREVTLEFYCPQTPVKRMLAVLTDESRGWQQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRQKADNDTHWYSVAQLRKGLRLFGKNSRLSVRRSSSGWLTFSDQWGYTFAVTPFVKHNETQR
Ga0308400_10005668	F043176	AGGAGG	MLQTYKIWEGERTFLPGDDASKYTVIEIVAEELGWFEDVNPDGFSCTAYYVYRTESGEIIINVVNKNYGVGEPNYGTIYRFSSLEEAAQSEQRYALSELRLI
Ga0308400_10005669	F006418	AGGAG	MPKRRSAPKPRPAREVVIEEGADYRLLYDRETRDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARGE