Scaffold Ga0308400_1000504

Overview

Basic Information

• Taxon OID: 3300032045
• Scaffold ID: Ga0308400_1000504
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14924
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004791	Metagenome / Metatranscriptome	423	Y
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F016100	Metagenome / Metatranscriptome	249	Y
F037517	Metagenome / Metatranscriptome	167	Y
F083527	Metagenome / Metatranscriptome	112	N
F093914	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308400_10005041	F083527	GGAGG	MSAFFGVKIQRQQPLVDAIRGVVAAKRRPVAARDRVYASEISACDRRITFGLLGCEPDAPRADSPSALIGDAIHAHLEALLIEAFPGRVETEVRVVGGAISGRIDALLVEDDNTLTVIDIKTV
Ga0308400_100050412	F037517	GGAGG	MRIRQIGTLVFDANTNIVVDANNQDAPGIGFRVNSLYDPQPFSVEIAFRRATRQAALNAVSALARELYSSAQRRQNGRFAVAGGVLVIAEDATGDTSLVSYLRDGSVTLLGVEAAANGVLARVRVTGTLINPFLNYAFAQTDVTSLKPYERRVITLSGTSDAYLYKSSLFYSVSNMNGLYNALFAAEELESATGTSRIQAISPASVSSGITMQNQSWNAGWQTLTRARFSSTTSGTITYNLAPSVPADVYRLFIEIFCPTTPPINAQYIVSWDGQPQIAETITGDRSWYAPALFVHRDTTVSLTLEIQNVPNNTLVMPLILVPTDGVSVWSVITPPTLQSFHTLDLQSAMLRPFETNPAGTVYGAPGLISSRYIAVFNGVMAPTITTASATLNIRSRRIEPAAFA
Ga0308400_100050415	F004791	AGGAGG	MSTPANIYDVDAIYVDRNALLIRDAATLLNRELTPEIIARLVRRAIGNQADLFPIRALRRVYERVLPQIFEPDAAIRARVEGMRPNVATITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSVGDEGNE
Ga0308400_100050416	F093914	N/A	GEAYVGGSSDYATVTVGKREPIEITLTFLYNEDTNSAANTIFGQFQSASPRLGVRWSPRGLVSQARAYATSNDGGTTTGLGVITNVTLSALDPGDAEPYVAMVTVRTPSLRQYTLGNDPTNLS
Ga0308400_10005043	F006252	AGGGGG	VRSFDEQAAFGLPYERLIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGDCPVAALEVKRRSVRSDAYPTTIIPQSVVDAAKRLTIPVFAAILFLDGLAVFDVLRTPSTVRWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308400_10005045	F016100	AGGAGG	MVTSVKVERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELLVGTHVPEPDWHRLGALVVVLFRSFAVVDVEVWQTDAGVWIADALVDFGCVRRLRKGEGETPLHAVIELITDIQRY
Ga0308400_10005048	F007404	GGAGG	VDIIEVFQLLAAGHNGLTALDYAWNALFGAIGAATAYLADTNGEVFLPRYDAEQHSVELGALGRVLVGAGAGTLVGYSGYVPFVAGVVAPTLLPALIDKIAWFVERRRK