Scaffold Ga0308400_1000181

Overview

Basic Information

• Taxon OID: 3300032045
• Scaffold ID: Ga0308400_1000181
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27887
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (30.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F023603	Metagenome / Metatranscriptome	209	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N
F054644	Metagenome / Metatranscriptome	139	Y
F068874	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308400_100018118	F023603	N/A	MLYTTADFTGQYRLDSNAITQADYQRAIDEHERTLLEYFFEPDSVEKIYAALPSSTPAVGVRNVLRDLALPFIFGRIKMGVASSVAGEPNTQGYTRIGYTPYLAYRGSETLRRLMRFAPFVVQAELTAPTATIPYPSPNPQAPDFVAIGDPVRAYATSGEVQTSVVSVTATDITLAIALPAGPVRLIVENLRIRISRAYLTF
Ga0308400_100018120	F038584	N/A	MTEEIKQIQKAGEELLATLHATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRGARKLMQRYVQKTTVGTNTPREYIGEAFYVTRQLVIEFVQDYLRTETLDVLAEITQVRLNPFTGAPAIVGEGGEKPTMATTPQRVTSNYQKIAFGDVITDEVLLAYPDIVEFLIWHGAYRLEVFLHNALITLLSSNASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWIANAAIVPFPYYWTLVFGALKSTTGEYLQLDRQLQGLALIPAGAAQTAPTVVFNENELEVFFLGDITVNFGRVLDAASDTNVRRLSMDLFYAPLPHAGRPVIVANTQNAINSMAQ
Ga0308400_100018122	F044249	GGCGG	MTKRDALLALLGASLTIVAKKYAMVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGAARLVFYLIFYVALLVALEQIASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVRQLTKVFRHEPPEKAS
Ga0308400_100018124	F007033	AGGA	MQCRCSQPLWALGIPDCYPVLRPIRRIAFETRLGPSSNPASFDLVNSTVYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPAEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVSFNEAAPIPIEPGTVQVRLLFPSDTTITKYEFSFDFAQSLMDFELVPIFADAALLNYTPGIAARLTAGWEPPVLFANVFALYTRGAGDLVIPITGLASHLELRNNADTLITTNFTEVSPGLYVSDPLTLSPSGNPYTIRVGSSAPTGAFDYTTAVAQFRV
Ga0308400_100018125	F068874	GAG	VFGRLRRVLRFYERVELPDVPAQAQSLSYGGKTIVSYPPSPAWAVREPLWLGRRELGVYAPSTAKMKRRMGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRGGLRKALLAALLGCAPLKKTKSVQSVEVAVRREEVVAHETLRLTTLLNDTIHLRNERLVIQYDTIRQMLRIEQVRPVVVVRDSVVRQNMVMQAPAWVAEERSEKRLSWWKRWGQGVFALMLGLSVLGFIGYLWLRALRIG
Ga0308400_10001814	F054644	N/A	MYYTIESEGLRERRLFRLYQTACMAALELAQRTPHEVRVVRLTTPSGLGRQIMCVYNCKYEVSSSPPPIQVEEDEEDGKRRYRRKRKK