NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318558_10693848

Scaffold Ga0318558_10693848


Overview

Basic Information
Taxon OID3300032044 Open in IMG/M
Scaffold IDGa0318558_10693848 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007096Metagenome / Metatranscriptome357Y
F008583Metagenome / Metatranscriptome331N

Sequences

Protein IDFamilyRBSSequence
Ga0318558_106938481F008583N/ARVTASPTRLSLGGDIMSKRNLVIEEGSVEALARLQKQDEEFCRRLRAAIETGRECCPTTVFTEPCTNRPVSNYMRPDLIRGYRAC
Ga0318558_106938482F007096N/AKWGGLFWATSLEKIIGGVIAIISFRPGGWMQQSAVPRCAILSVGSTGGIGQ

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