NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318545_10032076

Scaffold Ga0318545_10032076


Overview

Basic Information
Taxon OID3300032042 Open in IMG/M
Scaffold IDGa0318545_10032076 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1726
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023019Metagenome211Y
F049142Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0318545_100320761F049142AGGAGGMSSNCRFALDEERYVIDAVNVDNSRKVYYFEGAPEDDEHLRERVLWIRLAEILGKLMNSRPMQKLPSGEEYRPHNEACSAISWALLKTIAASHLNTFDPVLSIQHKFDGKLKSQKKHTQDFTSLALFRDDVECLLRDLYGDVESEALNSILRAVFGTVEQFAKIVRPDLW
Ga0318545_100320762F023019N/AFEQHFDDRLHRVRTEFERTGGIDPEFECVTDGEIFQVLGNWPDGHAKAAAYAGLRDSFRRRGVNRYVFASEVWVGKTPGMLPADDPDHGEGVQVLAVERNGLRRYAFAEIMRNGETATLGPWVLKSDVPPGWLLELLEEGHSDRAPVVEPRPLERISASDFPHLAGRNPAQAAEFRDSVEIHDQLGDLMAGQVQKDADRDPQAIFMALESVLRMIVKDMGSPKGIGEFARFLRDNPDKFPMFSTVPHSAPSNEQLRRCKATLRRFVFEKRELGHTDTTIFGAFMNMYMYVGSQALGALNLADHIENWDPEHQARLQQVGLRSSYELDDEEGQVFVALTPDRYPIGVMGRRNAVGDLFVSRIIAFPMGDFATAIEKIKQSGMELILGSEAKELLCKLEQVQ
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