Scaffold Ga0326512_10042305

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326512_10042305

Scaffold Ga0326512_10042305

Overview

Basic Information
Taxon OID	3300032038 Open in IMG/M
Scaffold ID	Ga0326512_10042305 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3446
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.5357	Long. (^o)	-121.7593	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084966	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326512_100423055	F084966	GGA	MLSLDDAVMVTKWLVEDGMNDDEIIRQELEQKCWFAPKSSESAKRLSDLIFDINPAEICSQIESDNLKKWCEIIQTEMKMAMVQLPCWGKDDEA

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