NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326512_10020620

Scaffold Ga0326512_10020620


Overview

Basic Information
Taxon OID3300032038 Open in IMG/M
Scaffold IDGa0326512_10020620 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4862
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0326512_1002062010F064301GGAMAKAKGITARTISKPTKVPPVWQIGIIFPDGNKIMKPKCTLNEIFLTYFLGLEKHLNKGFDAEQLFELYKKTYNNKGIKVGINYIDSWGHKWTGKVAWPRESKFIEFLNKRLNENCS
Ga0326512_1002062012F057035N/AMTEKEFLEKRTPIWLEGDDLHISTPSNMDKNDMHVFLSKKYGYNWLFAIRGYYWPGSHVMLYIGDYECPNCTTLVAPYLFNYFPDIKYVGFGCNKGAVGEIWPAKVLIVRDESCLKDDIFNK
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