Scaffold Ga0326512_10002492

Overview

Basic Information

• Taxon OID: 3300032038
• Scaffold ID: Ga0326512_10002492
• Source Dataset Name: Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13652
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5357
  • Long. (^o): -121.7593

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057003	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326512_100024928	F057003	N/A	MAINNMVDVSNISYCGKEGQEIFSKDIYDIDLRQYGITFLDGLKGKQKIYTGEISDVYQLYTCPFTPQGSASLAEAYIEPAVIKVNLESCYDNFWNTWLVESTAISLQGQIPPTFADWYFAKLRKEMQKEYQDLWWRGDTGYTGSSKVYLKTIDGIEKQLHDNTGVTKVSGATFTVDNAISQVEAIIMKGLEIANAAEVDTEGYKLFMNHNDLRVLEVALGKQCCPNSTNQVFANWGRENGRIYVMGFEIVPSMVSKGKMIFGPAKNLFLGFDSYDARIEYKLIDMRETTGDNAFRVIALTNIAAAILFPELFVLSE