Scaffold Ga0326512_10001597

Overview

Basic Information

• Taxon OID: 3300032038
• Scaffold ID: Ga0326512_10001597
• Source Dataset Name: Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17231
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (20.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5357
  • Long. (^o): -121.7593

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056169	Metagenome / Metatranscriptome	138	Y
F063247	Metagenome / Metatranscriptome	129	Y
F082008	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326512_100015971	F063247	N/A	YEHICKNIVGCEPQPRISASFGCWEWPITYQTKEQQDKTAEFLKDLYNKGLCRYASW
Ga0326512_1000159720	F082008	N/A	MGKGKGSLVVRERAALKRLEAAYEKFKAAGEDKKPWSSTRNGRIIYHRGRSYSEECERIKEEINNLKENISRNSI
Ga0326512_100015975	F056169	N/A	MLTSKEAIMIVRKYNLEAEVRQELASGLSPEEALEEWDIL