NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326509_1255818

Scaffold Ga0326509_1255818


Overview

Basic Information
Taxon OID3300032036 Open in IMG/M
Scaffold IDGa0326509_1255818 Open in IMG/M
Source Dataset NameMetatranscriptome of bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)618
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076726Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0326509_12558181F076726N/ANKLLPYEIPVMETFIRYKVRQIVSIIFKEYNGYIPRVEAPYLIRYFLQFPSNSQVVDEILVEISKLESSNDKSKELLEVEAFEKYLITILKTNKYSGYDKETLIEAFRILDNEKNGYLDLHTYYTFLKRYGISFTKEQIEEMESFLLKNDNELLESLGVQNDEVKKHKPTSTRKFYYESYVRKVLGDNQKHFEELMKEYKAFYDEY
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Institute for Fundamental Biomedical Research
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