NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310911_10454204

Scaffold Ga0310911_10454204


Overview

Basic Information
Taxon OID3300032035 Open in IMG/M
Scaffold IDGa0310911_10454204 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)742
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003466Metagenome / Metatranscriptome485Y
F032790Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0310911_104542041F032790GAGGLTEQQSWQDIAQSEGMTYLQCLPEAIPEGQFLVHNSVRPMHPLGSHGFRAWLQAQDEHLEPCDCGWSPELGTHYRVKLKVRVRYGAARATDF
Ga0310911_104542042F003466N/AACKGARSNHVGAAIARHKRAGRVEERDGKLYTTQPSGTEHRVAV

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