NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310911_10114417

Scaffold Ga0310911_10114417


Overview

Basic Information
Taxon OID3300032035 Open in IMG/M
Scaffold IDGa0310911_10114417 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1492
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005182Metagenome / Metatranscriptome409Y
F005930Metagenome / Metatranscriptome386Y

Sequences

Protein IDFamilyRBSSequence
Ga0310911_101144171F005930N/AAHPPLSQIKKRKRMVPTTMLICGSPADGFQIIGLFADRDDAQSYAEDYTLKDWWIAELTSPEAFAEMQWQRLRA
Ga0310911_101144172F005182GGAGMRKISLFAFSPALIAIGFGVWAASPAKAPVSPSIGQGIEPFKMMVNAKELPTVEFADYTFVFAH

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