Scaffold Ga0308407_1001835

Overview

Basic Information

• Taxon OID: 3300032034
• Scaffold ID: Ga0308407_1001835
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10385
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028051	Metagenome / Metatranscriptome	193	Y
F037460	Metagenome / Metatranscriptome	168	N
F052924	Metagenome	142	N
F069505	Metagenome	124	N
F087843	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308407_10018351	F037460	AGGAGG	MPQESKISDGIAFFDAAVRLLRKGWPPMPPLITGYVNYIRYGSVYWRCANGPLVLRWAEKIRQRQDWYGYAEPLLAYFFPCHPFRRPEWRPPEGILEGENPSNAIGWPAKALVLEWKRAARKRQPLWHPAHYVVYYRHFDNRVREWNAFYLYLAIFLRRELAQLQAAGPTEWLLLDGPAPIDSLSPAPHFHLAPGLQASWQDWLRAVRPVAKPYHSRRHKCLLA
Ga0308407_100183512	F087843	AGG	MHTGRAYTNVYDIGTDWQLIAGYSEYRSFLLVSVQEGEGCYLYFGSEPASQPTLPVQGVRLNANAPYIAFTYPPVQLTYGPVWARCHGPPNETEARVSVIEVSHPPECRGHIH
Ga0308407_100183513	F028051	AGGAGG	LDSSGRSSRWSIQAPNALTTERQQLTVTELLRLIRGLPQQRPSQTSLARRYNVELRTVVIDGPPGRYVVLRADPRRFAFYLWGPGFGSYYFSPYEFDDSGAGPFSASATSPLRITEESHPGLPRLEWKHLHTAGGTVRFYLIEVLDTAV
Ga0308407_10018355	F069505	AGGAG	MQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIEGCADVACKAVTAARLLSKAETLDEAVQAFRAAPELDDLPQPGADIFAQVYSIFENEKSRLYYSRVFGESLPGQSEDEKVVHAFLSFLEALATALERGVGG
Ga0308407_10018356	F052924	GGAG	MAKAQYKTEEERELKQLSIGLSYLTSEIRDFTRWVRTAPDPAGKVQEYRARLDRIFDRIGQLRETDPNRVAAMERRINAARQDLDNALQQAARGVEEPKSFFRRLYDGITRVTITVLQTLGGVVGWTFRRRGGP