Scaffold Ga0308402_1009717

Overview

Basic Information

• Taxon OID: 3300032033
• Scaffold ID: Ga0308402_1009717
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2283
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp. SCN 71-131 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010840	Metagenome / Metatranscriptome	298	Y
F016404	Metagenome / Metatranscriptome	247	N
F051735	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308402_10097172	F016404	N/A	MTVDELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFDEQPNAERDVLVIVDEAAFVKTV
Ga0308402_10097173	F010840	AGGAGG	VNLPFSQPLDKVTFGALAAATIIVLTWALREFVGIELPAEVQAALAVIFGYVVSYHTPLTEAEAEAIARKYYKYK
Ga0308402_10097174	F051735	AGGAGG	MFRDVTIINGPVPKDGVADYERLRIKARPLGRPYAWDNGRAWNSYVTNGGFILVFECEDGAVYIQEIEWEVDPYPDATPDPRTYYYYERYNSLAEARAGGRGWLIEYALGIE