NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308402_1004256

Scaffold Ga0308402_1004256


Overview

Basic Information
Taxon OID3300032033 Open in IMG/M
Scaffold IDGa0308402_1004256 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3675
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011548Metagenome / Metatranscriptome289Y
F026891Metagenome / Metatranscriptome196Y
F040649Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0308402_10042563F011548GAGGMVVISGVELVTSDSLLWAAQRGSERLRLIADAGVQVRRVGERVYVAHALPMPATRTVRLMPTTKYREPYHLRIDDSYRFGVIPKDALVWSDSIGGIYASGYAAAQMSIINPPAYVSIVRKRALVSQLCYLALLPSGELREMGTKHNVLLLAKTGEPLALQLARLLGDYDDFLG
Ga0308402_10042564F026891GGAGGMTIMAGDVVQIDAEDGRLWWAQNGAKRTRLSLYAAQGVHIERVDTELYLARDAVPVWTGDDWSREASVYLYPTEKDELYAVWLNTHCGFGVTPKDAVLWQASSVGGPKNSESKIAVLKPPCYIEEFTYKFATPSDWFSVTLDGAVRCLRKKSDVIALALRGDKDAKRLAEFKGWLSELNTVEVQTW
Ga0308402_10042566F040649AGGAGGMRKLNIDNPAKLFAQLSAITDACNPNDYAPLEYYLQGAEIELPDGSPATGDWLLAIKAVELADALVQHAEGDDALHRSFRLIYLAPLDTYFWGGYYWRDPVGFTILVRWHRIPKTFNAQLDQIRQRNTDRRCSDA
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